Commits · master · Lindner, Melanie / WGBS_Snakemake_SnpCalling

09 Apr, 2021 1 commit
- bla · 93312865
  melaniel authored Apr 09, 2021
  
  93312865
07 Apr, 2021 1 commit
- update container · 99884950
  melaniel authored Apr 07, 2021
  
  99884950
06 Apr, 2021 7 commits
- change alignment again · 2be4b54e
  melaniel authored Apr 06, 2021
  
  2be4b54e
- back to old version · 5929dd0f
  melaniel authored Apr 06, 2021
  
  5929dd0f
- again · 531af4de
  melaniel authored Apr 06, 2021
  
  531af4de
- again · b2e05e3b
  melaniel authored Apr 06, 2021
  
  b2e05e3b
- use coordinate sorted alignments · f7db7323
  melaniel authored Apr 06, 2021
  
  f7db7323
- redo · fbc29f2a
  melaniel authored Apr 06, 2021
  
  fbc29f2a
- add chromSplitted=Y to SNP calling · 19cbbbb6
  melaniel authored Apr 06, 2021
  
  19cbbbb6
30 Mar, 2021 2 commits
- gemBS container and new links · 9e1529e2
  Lindner authored Mar 30, 2021
  
  9e1529e2
- adjust genome path · c22f3ecc
  melaniel authored Mar 30, 2021
  
  c22f3ecc
29 Mar, 2021 14 commits
- again · 2f34b943
  melaniel authored Mar 29, 2021
  
  2f34b943
- again · b47f5ee5
  melaniel authored Mar 29, 2021
  
  b47f5ee5
- chnage links again · c28f7710
  melaniel authored Mar 29, 2021
  
  c28f7710
- update pathes · 35eaad0a
  melaniel authored Mar 29, 2021
  
  35eaad0a
- reverse chnage · e4dc4721
  melaniel authored Mar 29, 2021
  
  e4dc4721
- update genome path · 8eac53bb
  melaniel authored Mar 29, 2021
  
  8eac53bb
- use container as env · d6bc61bd
  melaniel authored Mar 29, 2021
  
  d6bc61bd
- adjust conda · 3da164d4
  melaniel authored Mar 29, 2021
  
  3da164d4
- adjust filter · 9c5ae5be
  melaniel authored Mar 29, 2021
  
  9c5ae5be
- update alignment (Bismark old flags) · 1aacf6d0
  melaniel authored Mar 29, 2021
  
  1aacf6d0
- use right alignment · fd4c8325
  melaniel authored Mar 29, 2021
  
  fd4c8325
- fix wildcard · 6e618d15
  melaniel authored Mar 29, 2021
  
  6e618d15
- adjust wildcard · d5b288f9
  melaniel authored Mar 29, 2021
  
  d5b288f9
- adjust parameters · fec5ddb4
  melaniel authored Mar 29, 2021
  
  fec5ddb4
27 Mar, 2021 1 commit
- update gemBS pipeline · 2ab5caeb
  melaniel authored Mar 27, 2021
  
  2ab5caeb
26 Mar, 2021 4 commits
- get out directories! · 29d0c922
  melaniel authored Mar 26, 2021
  
  29d0c922
- fix conda · 814a55c1
  melaniel authored Mar 26, 2021
  
  814a55c1
- fix rule_all · d4a55b7b
  melaniel authored Mar 26, 2021
  
  d4a55b7b
- update biscuit snakemake + conda env · 5ce8d004
  melaniel authored Mar 26, 2021
  
  5ce8d004
24 Mar, 2021 10 commits
- again · bbd848d3
  melaniel authored Mar 24, 2021
  
  bbd848d3
- try and fix conda · 32966faf
  melaniel authored Mar 24, 2021
  
  32966faf
- adjust conda · 3885ce9f
  melaniel authored Mar 24, 2021
  
  3885ce9f
- chnage other pathes too · e4d3184e
  melaniel authored Mar 24, 2021
  
  e4d3184e
- add full path to genome path (fix path) · 65b853b8
  melaniel authored Mar 24, 2021
  
  65b853b8
- add flags to rule out · 24442663
  melaniel authored Mar 24, 2021
  
  24442663
- add Bismark alignment with old flags to pipeline · 66c594d3
  melaniel authored Mar 24, 2021
  
  66c594d3
- try old flags · bbcc1434
  melaniel authored Mar 24, 2021
  
  bbcc1434
- align env · addea33c
  Lindner authored Mar 24, 2021
  
  addea33c
- fix wildcards · 3446794c
  melaniel authored Mar 24, 2021
  
  3446794c